I will post all updates up here by editing my post.
We are on a new server, all software has been re-installed, and we "should" be back to normal. Fingers crossed.
Fixed the Forum Category errors, this was caused by some additional security that I added and it doesn't like the () in the URLs. Prevents scripting in some hacker code. I adjusted the titles and they work fine now.
I found a couple "back doors" that were dangerous enough that I shut down the web server for a few hours earlier this evening. I have removed these and found the code in our database that would automatically rebuild these "back doors". I think this was the primary avenue that they used to destroy our website earlier. They are gone now.
I am still scouring the database (almost 1 GB of code) to see if there are any traces left behind. Let me know if you see anything unusual.
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